- Comparing the Age and Sex Trajectories of SARS-CoV-2 Morbidity and Mortality with Other Respiratory Pathogens.
Metcalf CJE, Paireau J, O'Driscoll M, Pivette M, Hubert B, Pontais I, Nickbakhsh S, Cummings DAT, Cauchemez S, Salje H.
Royal Society Open Science, 2022: 9(6):211498.
https://doi.org/10.1098/rsos.211498
- Assessing the role of multiple mechanisms increasing the age of dengue cases in Thailand.
Huang AT, Takahashi S, Salje H, Wang L, Garcia-Carreras B, Anderson K, ... & Cummings DAT.
Proceedings of the National Academy of Sciences, 2022: 119(20), e2115790119.
https://doi.org/10.1073/pnas.2115790119
- Individual, Household, and Community Drivers of Dengue Virus Infection Risk in Kamphaeng Phet Province, Thailand.
Ribeiro dos Santos G, Buddhari D, Iamsirithaworn S, Khampaen D, Ponlawat A, Fansiri T, ... & Cummings DAT, … & Anderson KB.
The Journal of Infectious Diseases, 2022: jiac177
https://doi.org/10.1093/infdis/jiac177
- Beneath the surface: Amino acid variation underlying two decades of dengue virus antigenic dynamics in Bangkok, Thailand.
Huang AT, Salje H, Escoto AC, Chowdhury N, Chávez C, Garcia-Carreras B, ... & Cummings DAT, Katzelnick LC.
PLoS Pathogens, 2022: 18(5), e1010500
https://doi.org/10.1371/journal.ppat.1010500
- Periodic synchronisation of dengue epidemics in Thailand over the last 5 decades driven by temperature and immunity.
García-Carreras B, Yang B, Grabowski MK, Sheppard LW, Huang AT, Salje H, ... & Cummings, DAT.
PLoS Biology, 2022: 20(3), e3001160.
https://doi.org/10.1371/journal.pbio.3001160
- Antigenic Evolution of dengue viruses over 20 years.
Katzelnick LC, Coello Escoto A, Huang AT, Garcia-Carreras B, Chowdhury N, Maljkovic Berry I, Chavez C, Buchy P, Duong V, Dussart P, Gromowski G, Macareo L, Thaisomboonsuk B, Fernandez S, Smith DJ, Jarman R, Whitehead SS, Salje H, Cummings DAT.
Science, 2021: 374(6570):999-1004.
https://doi.org/10.1126/science.abk0058
- Evaluation of the extended efficacy of the Dengvaxia vaccine against symptomatic and subclinical dengue infection.
Salje H, Alera MT, Chua MN, Hunsawong T, Ellison D, Srikiatkhachorn A, Jarman RG, Gromowski GD, Rodriguez-Barraquer I, Cauchemez S, Cummings DAT, Macareo L, Yoon IK, Fernandez S, Rothman AL.
Nature Medicine, 2021: 27(8):1395-400.
https://doi.org/10.1038/s41591-021-01392-9
- Modelling distributions of Aedes aegypti and Aedes albopictus using climate, host density and interspecies competition.
Yang B, Borgert BA, Alto BW, Boohene CK, Brew J, Deutsch K, DeValerio JT, Dinglasan RR, Dixon D, Faella JM, Fisher-Grainger SL, Glass GE, Hayes R Jr, Hoel DF, Horton A, Janusauskaite A, Kellner B, Kraemer MUG, Lucas KJ, Medina J, Morreale R, Petrie W, Reiner RC Jr, Riles MT, Salje H, Smith DL, Smith JP, Solis A, Stuck J, Vasquez C, Williams KF, Xue RD, Cummings DAT.
PLoS Neglected Tropical Diseases, 2021: 15(3):e0009063.
https://doi.org/10.1371/journal.pntd.0009063
- Reconstructing unseen transmission events to infer dengue dynamics from viral sequences.
Salje H, Wesolowski A, Brown TS, Kiang MV, Berry IM, Lefrancq N, Fernandez S, Jarman RG, Ruchusatsawat K, Iamsirithaworn S, Vandepitte WP, Suntarattiwong P, Read JM, Klungthong C, Thaisomboonsuk B, Engø-Monsen K, Buckee C, Cauchemez S, Cummings DAT.
Nature Communications, 2021: 12(1):1-10
https://doi.org/10.1038/s41467-021-21888-9
- Age-specific mortality and immunity patterns of SARS-CoV-2
O’Driscoll M, Ribeiro Dos Santos G, Wang L, Cummings DAT, Andrew S. Azman AS, Paireau J, Fontanet A, Cauchemez S, Salje H.
Nature, 2021: 590: 140–5
https://doi.org/10.1038/s41586-020-2918-0
- A systematic review of antibody mediated immunity to coronaviruses: kinetics, correlates of protection, and association with severity.
Huang AT, Garcia-Carreras B, Hitchings MD, Yang B, Katzelnick LC, Rattigan SM, Borgert BA, Moreno CA, Solomon BD, Trimmer-Smith L, Etienne V, Rodriguez-Barraquer I, Lessler J, Salje H, Burke DS, Wesolowski A, Cummings DAT.
Nature Communications, 2020: 11(1):1-6.
https://doi.org/10.1038/s41467-020-18450-4
- Seroepidemiologic study designs for determining SARS-COV-2 transmission and immunity.
Clapham H, Hay J, Routledge I, Takahashi S, Choisy M, Cummings DAT, Grenfell BT, Metcalf CJE, Mina M, Barraquer IR, Salje H.
Emerging Infectious Diseases, 2020: 26(9):1978.
https://doi.org/10.3201%2Feid2609.201840
- Pre-existing chikungunya virus neutralizing antibodies correlate with risk of symptomatic infection and subclinical seroconversion in a Philippine cohort
Yoon IK, Srikiatkhachorn A, Alera MT, Fernandez S, Cummings DAT, Salje H.
International Journal of Infectious Diseases, 2020: 167-73.
https://doi.org/10.1016/j.ijid.2020.03.073
- Opportunities for improved surveillance and control of dengue from age-specific case data
Rodriguez-Barraquer I, Salje H, Cummings DAT.
Elife, 2019: 8:e45474.
https://doi.org/10.7554/eLife.45474
- Differential mobility and local variation in infection attack rate.
Haw DJ, Cummings DAT, Lessler J, Salje H, Read JM, Riley S
PLoS Computational Biology, 2019; 15(1):e1006600.
doi: https://doi.org/10.1371/journal.pcbi.1006600
- Understanding dengue virus evolution to support epidemic surveillance and counter-measure development
Pollett S, Melendrez MC, Maljkovic Berry I, Duchene S, Salje H, Cummings DAT, Jarman RG.
Infection, 2018: 213(9):62:279-95.
https://doi.org/10.1016/j.meegid.2018.04.032
- Reconstruction of antibody dynamics and infection histories to evaluate dengue risk.
Salje H, Cummings DAT, Rodriguez-Barraquer I, Katzelnick LC, Lessler J, Klungthong C, Thaisomboonsuk B, Nisalak A, Weg A, Ellison D, Macareo L, Yoon IK, Jarman R, Thomas S, Rothman AL, Endy T, Cauchemez S
Nature, 2018; 557(7707): 719-723.
doi: 10.1038/s41586-018-0157-4
- Reply to Shanks and Brundage: Many plausible mechanisms of pandemic mortality disparities.
Grantz KH, Rane MS, Salje H, Glass GE, Schachterle SE, Cummings DAT.
Proc Natl Acad Sci, 2017; 114(18): E3588-E358.
doi: 10.1073/pnas.1703851114
- Dengue diversity across spatial and temporal scales: Local structure and the effect of host population size.
Salje H, Lessler J, Maljkovic Berry I, Melendrez MC, Endy T, Kalayanarooj S, A-Nuegoonpipat A, Chanama S, Sangkijporn S, Klungthong C, Thaisomboonsuk B, Nisalak A, Gibbons RV, Iamsirithaworn S, Macareo LR, Yoon IK, Sangarsang A, Jarman RG, Cummings DA.
Science, 2017; 355(6331): 1302-1306.
doi: 10.1126/science.aaj9384
- Synchrony of Dengue Incidence in Ho Chi Minh City and Bangkok.
Hoang Quoc C, Henrik S, Isabel RB, In-Kyu Y, Chau NV, Hung NT, Tuan HM, Lan PT, Willis B, Nisalak A, Kalayanarooj S, Cummings DA, Simmons CP.
PLoS Negl Trop Dis, 2016; 10(12): e0005188.
doi: 10.1371/journal.pntd.0005188
